Comparative genomics and phylogenetic discordance of cultivated tomato and close wild relatives / (Registro nro. 13062)
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| 000 -LEADER | |
|---|---|
| fixed length control field | 03391nab a22004457a 4500 |
| 003 - CONTROL NUMBER IDENTIFIER | |
| control field | EC-PaCDF |
| 005 - DATE AND TIME OF LATEST TRANSACTION | |
| control field | 20210111111735.0 |
| 008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION | |
| fixed length control field | 170725t20152015xxu|||||||||||0|||||eng|d |
| 040 ## - CATALOGING SOURCE | |
| Original cataloging agency | EC-PaCDF |
| Language of cataloging | spa |
| Transcribing agency | EC-PaCDF |
| 082 04 - DEWEY DECIMAL CLASSIFICATION NUMBER | |
| Edition number | 23 |
| Classification number | 583.959313 |
| 100 1# - MAIN ENTRY--PERSONAL NAME | |
| Personal name | Strickler, Susan R. |
| Relator term | autor |
| 245 10 - TITLE STATEMENT | |
| Title | Comparative genomics and phylogenetic discordance of cultivated tomato and close wild relatives / |
| Statement of responsibility, etc. | Susan R. Strickler ... [et al.]. |
| 260 3# - PUBLICATION, DISTRIBUTION, ETC. (IMPRINT) | |
| Date of publication, distribution, etc. | 2015. |
| 300 ## - PHYSICAL DESCRIPTION | |
| Extent | : 1-19 p. |
| 520 0# - SUMMARY, ETC. | |
| Summary, etc. | Background. Studies of ancestry are difficult in the tomato because it crosses with many wild relatives and species in the tomato clade that have diverged very recently. As a result, the phylogeny in relation to its closest relatives remains uncertain. By using the coding sequence fromSolanum lycopersicum, S. galapagense, S. pimpinellifolium, S. corneliomuelleri, and S. tuberosum and the genomic sequence fromS. lycopersicum ‘Heinz’, an heirloomline, S. lycopersicum ‘Yellow Pear’, and two of cultivated tomato’s closest relatives, S. galapagense and S. pimpinellifolium, we have aimed to resolve the phylogenies of these closely related species as well as identify phylogenetic discordance in the reference cultivated tomato. Results. Divergence date estimates suggest that the divergence of S. lycopersicum, S. galapagense, and S. pimpinellifolium happened less than 0.5 MYA. Phylogenies based on 8,857 coding sequences support grouping of S. lycopersicum and S. galapagense, although two secondary trees are also highly represented. A total of 25 genes in our analysis had sites with evidence of positive selection along the S. lycopersicum lineage. Whole genome phylogenies showed that while incongruence is prevalent in genomic comparisons between these genotypes, likely as a result of introgression and incomplete lineage sorting, a primary phylogenetic history was strongly supported. Conclusions. Based on analysis of these genotypes, S. galapagense appears to be closely related to S. lycopersicum, suggesting they had a common ancestor prior to the arrival of an S. galapagense ancestor to the Galápagos Islands, but after divergence of the sequenced S. pimpinellifolium. Genes showing selection along the S. lycopersicum lineage may be important in domestication or selection occurring post-domestication. Further analysis of intraspecific data in these species will help to establish the evolutionary history of cultivated tomato. The use of an heirloomline is helpful in deducing true phylogenetic information of S. lycopersicum and identifying regions of introgression fromwild species. |
| 546 ## - LANGUAGE NOTE | |
| Language note | Inglés |
| 653 ## - INDEX TERM--UNCONTROLLED | |
| Uncontrolled term | Tomato |
| 653 ## - INDEX TERM--UNCONTROLLED | |
| Uncontrolled term | Tomate |
| 653 ## - INDEX TERM--UNCONTROLLED | |
| Uncontrolled term | Phylogeny, |
| 653 ## - INDEX TERM--UNCONTROLLED | |
| Uncontrolled term | Filogenia |
| 653 ## - INDEX TERM--UNCONTROLLED | |
| Uncontrolled term | Solanum |
| 653 ## - INDEX TERM--UNCONTROLLED | |
| Uncontrolled term | Solar |
| 653 ## - INDEX TERM--UNCONTROLLED | |
| Uncontrolled term | Genome |
| 653 ## - INDEX TERM--UNCONTROLLED | |
| Uncontrolled term | Genoma |
| 653 ## - INDEX TERM--UNCONTROLLED | |
| Uncontrolled term | Incomplete lineage sorting |
| 653 ## - INDEX TERM--UNCONTROLLED | |
| Uncontrolled term | Clasificación de linaje incompleto |
| 653 ## - INDEX TERM--UNCONTROLLED | |
| Uncontrolled term | Introgression |
| 653 ## - INDEX TERM--UNCONTROLLED | |
| Uncontrolled term | Introgreción |
| 653 ## - INDEX TERM--UNCONTROLLED | |
| Uncontrolled term | Selection |
| 653 ## - INDEX TERM--UNCONTROLLED | |
| Uncontrolled term | Selección |
| 700 1# - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Bombarely, Aureliano. |
| Relator term | autor |
| 700 1# - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Munkvold, Jesse D. |
| Relator term | autor |
| 700 1# - ADDED ENTRY--PERSONAL NAME | |
| Personal name | York, Thomas. |
| Relator term | autor |
| 700 1# - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Menda, Naama. |
| Relator term | autor |
| 700 1# - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Martin, Gregory B. |
| Relator term | autor |
| 700 1# - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Mueller, Lukas A. |
| Relator term | autor |
| 773 0# - HOST ITEM ENTRY | |
| Related parts | (Feb 2015) p. 1-19 |
| Title | PeerJ. |
| 856 0# - ELECTRONIC LOCATION AND ACCESS | |
| Uniform Resource Identifier | http://dx.doi.org/10.7717/peerj.793 |
| 942 ## - ADDED ENTRY ELEMENTS (KOHA) | |
| Source of classification or shelving scheme | Dewey Decimal Classification |
| Koha item type | Artículo |
| Withdrawn status | Source of classification or shelving scheme | Damaged status | Not for loan | Collection code | Home library | Current library | Shelving location | Date acquired | Total Checkouts | Full call number | Barcode | Date last seen | Price effective from | Koha item type |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Dewey Decimal Classification | Galápagos | Corley Smith Library | Corley Smith Library | Artículos | 25/07/2017 | 583.959313 STR 2015 | 2021-0014 | 25/07/2017 | 25/07/2017 | Artículo | ||||
| Dewey Decimal Classification | Galápagos | Corley Smith Library | Corley Smith Library | Colección PDF | 25/07/2017 | 583.959313 STR 2015 | 2021-1499 | 25/07/2017 | 25/07/2017 | Documento electrónico |